High-Throughput Sequencing-Based (HTS) Detection and Characterization of Known and New Emerging Viruses in Blueberries (Vaccinium spp.)


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Akkan R., Roumı V., Çağlayan K.

Uluslararası Katılımlı IX. Bitki Koruma Kongresine, Ankara, Türkiye, 3 - 05 Eylül 2025, ss.69, (Özet Bildiri)

  • Yayın Türü: Bildiri / Özet Bildiri
  • Basıldığı Şehir: Ankara
  • Basıldığı Ülke: Türkiye
  • Sayfa Sayıları: ss.69
  • Hatay Mustafa Kemal Üniversitesi Adresli: Evet

Özet

 

To date, only Ophiovirus vaccinii (blueberry mosaic associated virus) (BlMaV) has been detected in Vaccinium spp., whose cultivation and popularity have been increasing over the years in Türkiye. Within the scope of this study, samples were collected from new blueberry production areas as well as Blacksea Region where survey studies have already been conducted, and the presence of possible new viruses and whole genome analyses of known viruses were performed using High Throughput Sequencing (HTS) and RT-PCR/Sanger sequencing technologies. For this purpose, the whole genome sequencing of 10 BlMaV isolates (5 commercial blueberry, 5 wild blueberry) obtained from different Vaccinium species were performed for the first time in our country. Thus, an important contribution was supplied to the world literature by reporting 10 whole genome sequences from our country regarding BlMaV, which was identified in 2014 and has a limited number of whole genome data are available in the Gene Bank.  YKD analyses also showed the presence of Nepovirus myrtilli (blueberry leaf mottle virus (BLMoV)), as well as 3 new blueberry viruses, namely Soymovirus maculavaccinii (blueberry red ringspot virus (BRRV)), Amalgavirus vaccinii (blueberry latent virus (BlLV)) and blueberry virüs L (BlVL) which is still unclassified in genus Luteovirus. In addition, the genome sequences of some viruses that have been detected in different hosts and have not yet been reported in blueberries, such as Cucumovirus CMV (cucumber mosaic virus (CMV)), Deltapartitivirus duobetae (beet cryptic virus 2), Duamitovirus crpa1 (Beta vulgaris mitovirus 1), Potyvirus yituberosi (potato virus Y), grapevine associated narnavirus-1 (unclassified, Narnavirus) and Botrytis cinerea mitoviruses 1-4 (unclassified, Duamitovirus) were also detected. When the  prevalence of BlMaV and new blueberry viruses detected in this study were investigated, 58% of the 290 blueberry samples tested were found to be infected by BlVL, 23% by BlMaV, 10% by BLMoV and 9% by BRRV. This study revealed that the most common blueberry virus in our country is blueberry virus L, which was detected for the first time in frame of this study. When the whole genome sequences of BlMaV isolates from our country were compared with the reference sequences, it showed 90% nucleotide similarity in the RNA1 and 94% in the RNA2 and RNA3. As a result of the phylogenetic analysis, it was determined that Turkish BlMaV isolates were in the same group with three Japanese isolates (LC066299, LC066300 and LC066301), and no significant recombination signal was found among the Turkish isolates.